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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025503 Open in IMG/M |
| Scaffold ID | Ga0209012_1005047 Open in IMG/M |
| Source Dataset Name | Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8461 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (82.35%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Yellowstone National Park, Wyoming, USA | |||||||
| Coordinates | Lat. (o) | 44.376 | Long. (o) | -110.69 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F033508 | Metagenome / Metatranscriptome | 177 | Y |
| F047176 | Metagenome / Metatranscriptome | 150 | N |
| F065947 | Metagenome | 127 | Y |
| F072527 | Metagenome / Metatranscriptome | 121 | N |
| F084462 | Metagenome | 112 | N |
| F099550 | Metagenome / Metatranscriptome | 103 | Y |
| F101506 | Metagenome / Metatranscriptome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209012_100504710 | F072527 | GAG | MSQQPNRLAELLQQAVLAFGADRVQVLQRIRQYIAATDCTVLNVQLQQITNINMLRMLQAAGVPQCMQTTFYLQINKALRGVTP |
| Ga0209012_100504712 | F033508 | AGG | MAEAATPAPFVSSTTLRRVTGSSTTQLTIPARIGYRHVLYDLFVTNLPPYGYADISVGTRIFMRLPNTVANCVSITAPGYKVQGKGFLWGLSDLFGAEHLPNAAEDEDINVTLNAAATRIDAYYAEIKPQDVSSHSVNGGSDAKVKPFIELLDTLVTTTGTGQNVLNENMPTGLGLLDNNGRVKATTQFTLLTAFADYVSSGTNFTEYSRLHIYDEDEELFTPLNHEGLFIDYTVAEGDLFMNWTVRQYFKPDQPYIFKPNHQISLKADVPAVTGTGSTLRVALIGVRERIG |
| Ga0209012_100504713 | F047176 | GAGG | VSAMATRIFRFTISLSAGQANNDASGNPAPFVVTAPSGINRRIVEIRPWGTQSFEYQGNYDTELYHDIDSNDINTYHRPHYVALDINGTHEYSVVVTNNSTASGTFGVDLVVEESALATGGAAAPTAGGA |
| Ga0209012_100504716 | F084462 | GAGG | MSVPKEKKTVEVLGVAEVPAIEPSRLGQFDTQITYRVDPLHVFTFRVPQTNLTAQQIADAVKKDYAKRKGIVGMQVEV |
| Ga0209012_10050473 | F065947 | AGG | MLKSNHTFSLAKIRGVLKRRKVDKLPCVAYGTGNLSKKIGRGYFFYDYDTQSEEEVQRFAKRVQYTFYVAYILYRTKHGVMVMSTLTFSFEQLRKYYDQFQQEFPSDYLWDIPLFLRLSEKWNWQTGTVVSPMPAIIANPKNTDIYKLIREDMYPKKWYRTRD |
| Ga0209012_10050474 | F099550 | AGG | MRPGKTSIRAQSAVRNSDSKSIFTAMFATNGIVSIALSPRREPREEVMFRLTEEIKKLLASKRKNMQIVWVPLPILDEIAQVAERLHLALNQTIIVLVIYALRREQPEQPADGTLHFTCPICLQSFAAPEVFLAHIKGDEDVEVKPHI |
| Ga0209012_10050478 | F101506 | AGG | MNEDAVARTRISAIEQRIQTVEEQISDIRATQLRQLERQNYVLMLLTISLVTTTVNLIVLLVK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |