NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209012_1006010

Scaffold Ga0209012_1006010


Overview

Basic Information
Taxon OID3300025503 Open in IMG/M
Scaffold IDGa0209012_1006010 Open in IMG/M
Source Dataset NameFerric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7234
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006070Metagenome / Metatranscriptome382N
F011233Metagenome / Metatranscriptome293N
F027904Metagenome / Metatranscriptome193N

Sequences

Protein IDFamilyRBSSequence
Ga0209012_10060102F027904GGGGGVEHKYEPPDYDLFNLNNGSTTIGTTAVTLLYEGQPNATVFAPSDLKLRVKQLIIQNTMSSPITVQLLAVAAPNTNLPSPIPKTPPIPVNANSAVTLSEDEWSISIKAGYGLAVVSSAASSANVFAKCYFTKGTGSPL
Ga0209012_10060104F011233GGAGGVAVPWFLPFVKGWRYHVPKLQRELLSGLPVPFTSEYTIINGQFPGYFVSAAVGTTDPNFITRASVDGLTVIEVTVGDLRDARVYRNQMGEPNILSYGSYIRGFPLPVYALSLSGDGLPFYQSIKIEIVPRNQPALITGFAANIIEIYDVNLFKESVKEFFESITPSVVVPPAVPSQPRFVAEEVVSAKLPVKVT
Ga0209012_10060105F006070AGGVTLYPYLVVDLPITDTNTHTYRTDPFNPLALTQPGISLVRLGESVPPVRAFNVYVYNFANTALNVQLIANENAKNYQYGALLDGLDYQSESSYPDFNVGSAVAVPAGSLSTPSIQVIQSDFYTGAAERYLSVALTYSTAPSAGFVRVHIDLFYEGF
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