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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025503 Open in IMG/M |
| Scaffold ID | Ga0209012_1006245 Open in IMG/M |
| Source Dataset Name | Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7012 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (42.86%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Caldisphaeraceae → Caldisphaera → unclassified Caldisphaera → Caldisphaera sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Yellowstone National Park, Wyoming, USA | |||||||
| Coordinates | Lat. (o) | 44.376 | Long. (o) | -110.69 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F049100 | Metagenome / Metatranscriptome | 147 | Y |
| F084461 | Metagenome / Metatranscriptome | 112 | N |
| F101504 | Metagenome / Metatranscriptome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209012_100624513 | F049100 | GAG | MVIRKLSMSEIENLKENLNHGGRKSKYDQYLNDLEIGEWLEIDNVNRGVISRASKRLNKKFSVHYINGKYYIERIE |
| Ga0209012_10062452 | F084461 | AGG | MSLDLGTLLKNNKATLQSEGGKIVLRISFDDLVQAMYNGLPEQSKKVVSITHDGKQVIISFDASILSGMVGIVAR |
| Ga0209012_10062459 | F101504 | N/A | VSQASLKQIATELNNFDGILFVDDIGAINTEYMRVTTMATLTYLAYQHYLRRLDYQTNLEIKNFNASLIINLQPSVFDEIVNNTSFEANIMDKSYRYYNMRIPDNKPFQHIKIKELQHIKDKFENMKVDTDSQRVEALANNFMTFNSVARRYKIVNNFVKLTAILNEHKIATSEDYQFVAKMLLNNIIESELLERKGFSSRFKFNVFLFNVMLMSKYYGNIFHYSKLKTYLNVTRQTIYNYAKANNIKIDNGYIIYDNERILKVLRNVI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |