Scaffold Ga0209012

Basic Information
Taxon OID	3300025503 Open in IMG/M
Scaffold ID	Ga0209012_1007215 Open in IMG/M
Source Dataset Name	Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209012_1007215 Open in IMG/M

Source Dataset Name

Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6174
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

6174

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon OSP_D	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon OSP_D

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.376

Long. (^o)

-110.69

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006070	Metagenome / Metatranscriptome	382	N
F011233	Metagenome / Metatranscriptome	293	N
F027904	Metagenome / Metatranscriptome	193	N
F067921	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209012_10072151	F067921	GGGGG	LSETFSRIEDRILRNGQYLLVSYLGSQHPEVSSYTGFRVTKHNFTTLYYNFATEVPNFLPMAPFGGQASSTNSPPYITNFKFSLQQVQNVTDMFDLGKNYDAYQVFYGISPSYLRTMLQIQQQFIAVLEQNINPSPSFVEMGIDGFQSPLFAPDPRTEFIVFLNFTYNMTLMNMATIPILPAFNFVINRMILEPLGREELKKAILAGFPVRSLGAVDSSIMISHKNYPGLVTLSYRDIYG
Ga0209012_10072152	F027904	GGTGG	MEKYNPPEYDLFNLNNGSTLVGSTAVTLLYEGQTNAVVVVPPDLTLRVKQVIIQNTTGSVATVQLQAVTTQSGLPSPVNKTPPIPVPANSAVTLDEEEWSISVKTGYSLAAIDSGMTTGGSGSSNVFVKAYFVKGTGSPI
Ga0209012_10072154	F011233	N/A	LPFVKGWRYHVPKLQQELLSGLSVPFTSEYTILNGQFPGYFVSVAIGTTDPNFITRVSADGLTVIEVTAGDLRDARVYRNQMGEPNILSYGSYIRGFPLPVYALSLSGDGLPFYQSIKIEIVPRNQPALITGFAANIIEIYDVNLFKESTKEFFESITPSVVVPPAVPSQPRFVAEGVVSAKLPVKVT
Ga0209012_10072155	F006070	AGG	MTLYPYLVVDLPITDTNTHTYRTDPFNPLALTQPGISLIRLGESVPPVRAFNVYVYNFANAALNVQVIANENAKNYQYGYLLDGLDYQSESGYPDFNIGSAVGVPAGSLSTPSVQAIQSDFYTGAAERYLSVALTYSTAPTSGFVRAHIDLFYEGF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209012_1007215

Overview

Ecosystem & Geography

Associated Families

Sequences