NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209012_1007980

Scaffold Ga0209012_1007980


Overview

Basic Information
Taxon OID3300025503 Open in IMG/M
Scaffold IDGa0209012_1007980 Open in IMG/M
Source Dataset NameFerric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5629
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon OSP_D(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018963Metagenome / Metatranscriptome232N
F033507Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0209012_10079804F018963AGGAGGLSRGSVGLDTIGDRPVGSKLMFPYVRGEDGSVTDTLIMSFRTKRVVYSKLSVNKFGHGYRAYTLLPANYLMYEAYRTNRGRASIKISVIDVSPNPLSHFRVKDIWVMYEGVSPVTLVEDLPENIRSIIEGNRGELPLYEYLETEVPK
Ga0209012_10079806F033507N/AMVKSNVLDVNVVASTTTSSGLGGTLTVNLSVTCPSSATGCSVIQQGGVYYLYPVLNGYYTCGLQMGNQSVQYTWTLNVSATPVSLASGATVSVEISYFDTLPNKPSYTENWFFTLNSNGEASQTFSACITPVNVFPESSVGIRVTGVKSASAQPINYTSSSISIIPQ
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