NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209012_1008307

Scaffold Ga0209012_1008307


Overview

Basic Information
Taxon OID3300025503 Open in IMG/M
Scaffold IDGa0209012_1008307 Open in IMG/M
Source Dataset NameFerric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5412
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008949Metagenome / Metatranscriptome325Y
F011097Metagenome / Metatranscriptome295Y
F021133Metagenome / Metatranscriptome220N

Sequences

Protein IDFamilyRBSSequence
Ga0209012_10083072F011097GGAGGMIRDIPLYTSGGTDPFTDLAVGGSPITGSGGNGQLLRFHPNYARLLILITGLSGTSPSIQFTVGSFYGSNNYTLPPITSPQYVYIIGNENKTIITYLNTSSQVLQQVELPYNTFLNGVNISWSVSGTSPSITAYIHFEFEDEEEGE
Ga0209012_10083073F008949AGGAGGMSSQTVTLGTQTITPKVQDLGNTYYIEFQVKITKYLNNSTNQTIDVKFICNKYKQVPSANPLSPPTTVQKTIQECVDEWYNINKSVYEVA
Ga0209012_10083075F021133N/AMARRDDLIREIYENGNYAIKKICEMGSDDNMANFSATDCIIGTTNTHLALKIVKEKGYPQDVIEYLENQSKQEQWHCQLHIGKPPKPYDFMVAQKHREILLKYSIYVWMGVMPLLGEKTALAKAICWRREDDPHFVNKFATVDEYYHTTYPLLLLYKYASEEELEKIVKLQKEYIAEIFKLN
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