NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208148_1008053

Scaffold Ga0208148_1008053


Overview

Basic Information
Taxon OID3300025508 Open in IMG/M
Scaffold IDGa0208148_1008053 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3329
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015153Metagenome / Metatranscriptome257Y
F033251Metagenome178N
F067196Metagenome126N
F082525Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0208148_10080531F067196AGGAMPKFNNIKEKQKFFRNAMRKLDTGLPKEASPDLIKFFVLHVITAYDHDDCWDDIKGFVDFALKEKSQFDSARQAVEDADNMLDAITNSKD
Ga0208148_10080532F033251AGGAMADKKKRNLTPKKRAMLRWTGKEIDQLLEYKATGFKHSEIGELMGRSTKSINVKMSKIRLGVEKASNPVDDLTPFQKNLDSTLFGDVSPDDKPKKPRKPRATKLSLTPKPLVTDAFNVPKKPVYVAVVLALVIVAWYLGSMS
Ga0208148_10080535F082525AGGAMDFKIKTGVPIPDISLGKKRGRGKWQVLLSSMSDGDCVDVPLRSYNSIYVAASRLGITLMSRREGDGLSDGFVRIWRVSDG
Ga0208148_10080538F015153AGGAGGMKPQEIFDAAAIHLMGMEGPSLDMDGDACVYRGYDDDCEFNGQMCAVGLFISDQHYDDDLEGQGITGSQSVADAVAASWEQEHLTDDQLSLLADLQNAHDETSGGKEWSSNIVTALDGVATKFHLRFDPKGASA
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