NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208148_1038250

Scaffold Ga0208148_1038250


Overview

Basic Information
Taxon OID3300025508 Open in IMG/M
Scaffold IDGa0208148_1038250 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1249
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002390Metagenome565Y
F008400Metagenome334Y
F101069Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0208148_10382501F008400GGAMSKQDNSLLPKLAMGLALFIALKFGTKVLAWWQKRNKKQGET
Ga0208148_10382502F101069GGAMSKQDNNSKHTTKMKTINIKLTDEQHCMIKRIAKGDKRKVSDLIYLALSRGFEYMYDETSLHIDKVESDYTDEEKKQIAKNKKLEATKGWNDLNFKEQKERGYDYVCKVMSNYPSQKDFMPGFAESLERNVTEGLE
Ga0208148_10382504F002390AGGAGMKHHASQLFPIAVSRLIEIGEKARKQREDRERAKRVARPRETRACMHVMHEEKQAKQLQLQLK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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