NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208714_1012427

Scaffold Ga0208714_1012427


Overview

Basic Information
Taxon OID3300025527 Open in IMG/M
Scaffold IDGa0208714_1012427 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-072012 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2178
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001289Metagenome / Metatranscriptome730Y
F054250Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0208714_10124271F054250AGGAGGMPLDSLELRTSLQRVLIGLILILVPLTVFGFYVALQGDSQIRQMAGENIRSVTRTSAEFTSQFIAGRLRDVSVIANNPSIVQAVISANQQYQRLPEDAVLSKVEALEEKWNNSEGDALAKNILASDLARQLRRM
Ga0208714_10124273F001289GAGGMKNPYDVLRMKEQEMLRVRKEMDALRVAARLLGAEDPGAANGEGHPKLQRVVEMP

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