Scaffold Ga0208714_1012944

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208714_1012944

Scaffold Ga0208714_1012944

Overview

Basic Information
Taxon OID	3300025527 Open in IMG/M
Scaffold ID	Ga0208714_1012944 Open in IMG/M
Source Dataset Name	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-072012 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2123
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location Name	Barrow Environmental Observatory site, Barrow, Alaska
Coordinates	Lat. (^o)	71.2999	Long. (^o)	-156.61	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024632	Metagenome / Metatranscriptome	205	Y
F076358	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208714_10129443	F076358	GGAGG	MSFLDSSRPHPRSVLWLFYSSAFLSAIMFSVASHAPVSYYKPLLALALVTALAAAFFLVLFLRSKDERERKINYGALTFAFVGTLVFSLVVGLAQQLGFHSVPWLGLPAVMIVLWSFGLILYSWRDR
Ga0208714_10129446	F024632	AGGA	MERRSKQREGRLRGKYPEVHGKVVDFITHTIDDGTLYFTVRFADQTSFCVRYACDMFAVGTELSDWQSGDFHIIREYMKPIPR

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