NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208249_1005503

Scaffold Ga0208249_1005503


Overview

Basic Information
Taxon OID3300025532 Open in IMG/M
Scaffold IDGa0208249_1005503 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - MA1M (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4090
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057980Metagenome135Y
F064499Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0208249_10055033F064499N/AMTTEAHVINLTERTDRWEQMQKSWADQPITLVRREAIKISQPDIPDAFHAVFLKHREMLTTAHKLGEKRILIMEDDAHPCKDFARHWTSIKEYLDSRDDWDLFNGGMLMIRDCVDKVIRLDHKDQKDPTMVLGVWRGAMAHFLYMNVEPCLKKMEEWEADGKPMFDGWYSHKMKTLASIPYLAIQLDGFSDADGQHRSWEDRFKYEEDMMKYALREFYAPLPTNPGFRHDDPRQTILREIDRTSGGFEPPKSAEWDGHGYS
Ga0208249_10055035F057980N/AVYGKGKKSIFDEALIYLGTLDAKPAFEKLPIENKLILEEYDPVTFEEYQTDLKKHQMERLEKNKAPMNALLVFDDFVGAGLMKKPRANVPPPVEKLALTSRHECNTTIMFCSQVYKNSGFSAPSVRNNITTFVVSRMSRQELVKIAEELSEDYEVDEWIHIYDMAMASEPYNFVVLDRRRPMPDRWTIKFHTPFPPSRKTKQMRLLMRRASVSSSESESSSGSDA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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