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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025543 Open in IMG/M |
| Scaffold ID | Ga0208303_1000708 Open in IMG/M |
| Source Dataset Name | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13691 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (80.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Chesapeake Bay | |||||||
| Coordinates | Lat. (o) | 37.1 | Long. (o) | -76.0972 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000857 | Metagenome / Metatranscriptome | 858 | Y |
| F001059 | Metagenome / Metatranscriptome | 790 | Y |
| F001915 | Metagenome / Metatranscriptome | 617 | Y |
| F003521 | Metagenome / Metatranscriptome | 481 | Y |
| F004695 | Metagenome | 427 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208303_100070811 | F001059 | AGGA | MATYDIAALKEDLPNARDLAQFVYDKVGISLDLVGKSKEDQYGVAKNALEGKKFPQEFVTEENPYVDKKDLIPVDEIRKLPERSKDLPDPSAQVHFFGATNMPHPLDPQSDRKVGISFKKYENGMITFQIMGPLEQQAVGARINKYGQSVPEKYTWIDPRTEELVMRRPDGTYTEKGRGLHTYCIGEKGGGIWSLIDRDMVTVTQKNIANPWA |
| Ga0208303_100070814 | F004695 | AGGA | MLDKQNIIVPYIEAPPGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGLDYIHPVVNPGVDYATAVITKCLMPNGKVNFEFERFSEMDSAQANQATDMVKYMLNSKNNSYQIIRDWAQDSLLHKNGIVMVSPVREPVTQYKEVEGTKDQLRVFETLAAEKGLTAKRQGMEKIDVDLEMAMQSIAPNENGEIDVNSALNQNTVYRAKYKLTGYSTTVRVKHVAQHYFVCNPTISTIQDQDFVGFYEPMTIHECKAQYPYVDLEKLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVIMLTTAWIRKDVDGDGEEEIVEVCYSGSYVLYVKEVDFIPLAAMCPKPIVGNFFGYSLAERLIPMQEYATSIARAEISFAMQASTPRIGVNPEFIDAEEIQRGVSAMFILDRKFDPQKHIFQFQPMQGNLAYVQSAMQRFEADKMAMIGMTSPSDVLNPEVMKDGNSGYKLQMAMGPNQLIQDEMVKNCAIGLRDVIYIIWKTLIQYSDDYNIQQLANVCGKGQPFMDAKSMENFEFIDRQIINIDLALGFLSEENRLTRQQLITQTQAAFSAAMMQIDPSVPELFAKLRRPYEDTLKVLGVKDVDAYLPTMEEASKMAQNKAQQGPGLAEQELSSKVAMNTAKVKDTEANTAFTVRKTQDLDTDDMFEALAAKRDKLKAVQID |
| Ga0208303_100070815 | F003521 | AGGA | MKSLVLKIRYFFNRRVKVTDARKEADVSRRTLVIENGECAYRLLANEDFALMFNLYRFGILERLEDSTDDLDRISNAHYVAGVRDFISFIEKQEYLGKVAKKVIT |
| Ga0208303_100070818 | F000857 | GGAG | MELNLNNEEAKVNEDYYTKGNLSGGLESLLIKNDKMYNEVKSGTWSQTFRTPNMDYKVGAQDGVRFVQYEQKNVEAVKQSCKEMREFYKEHGTDNPFFAGTFHAMNLPKCFAHEISSKWFNNRPWELIKKDKQDKILFYAIVNEHYSDFVCHPSGKIPLPYNPTVPTK |
| Ga0208303_10007086 | F001915 | AGGA | MEWQLAHPLYDVEDIVAMAKDHFEGEVDQILRTDPQVMRKNVTMTATYQLFDKNREFLAVCRGEPLLIEGNHIQGELLGYCWYDRGGYTTYSIDEITNAKFHHVDLKLSPRLRVKLINQMIDQHILWANSCGIPVICSTSIRSDHDGFMKIHKKRGFQINGSYAWLKTKDGMDRMNNV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |