NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208303_1001708

Scaffold Ga0208303_1001708


Overview

Basic Information
Taxon OID3300025543 Open in IMG/M
Scaffold IDGa0208303_1001708 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8508
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)37.1Long. (o)-76.0972Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002495Metagenome / Metatranscriptome554Y
F009077Metagenome / Metatranscriptome323Y
F038215Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0208303_100170817F002495GGAGGMSTNGNAKQKDWVLFPYKADDERALKIAFSGNVTLDNGNKGTILGVKGVSKDGNSKFVRVFAQIGILFKGDDKFTGEMNYPDAGGHKGLIGWLNDEGTILSGYKNDPKPKQAKPQSKEIP
Ga0208303_10017086F009077GGAMKNKDFESVSNILEDKNPNKKFYNFMDFGDCQSRIDEDIIPKVEIVELPKRYFNKLIKFIKKG
Ga0208303_10017088F038215N/AMILKESGRKKGKNLNKTLMKEIEKPSIDIEKLKLITFKNIVEGSRSINGVTWNKIKRLKGKDKKCLKQLSL
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