NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208303_1004554

Scaffold Ga0208303_1004554


Overview

Basic Information
Taxon OID3300025543 Open in IMG/M
Scaffold IDGa0208303_1004554 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4841
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)37.1Long. (o)-76.0972Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004537Metagenome / Metatranscriptome434Y
F005848Metagenome / Metatranscriptome388Y

Sequences

Protein IDFamilyRBSSequence
Ga0208303_100455410F004537GGAGMPFSNNIVNNYSLNSGNTPLLYPVRIICPANATTGISFPDQFLGRAISLKITNNDSANAASYDYNLNGNGTGVNLPSSNFSTIDNTVVNYLTVIAGAAGTVLVEAQILPATRAEVPIEVQ
Ga0208303_100455411F005848AGGAGMTLPVQRTYQFQGAAPALNVPVFMADLQTLQNNFLTLTPNQLQDVVMNPPLAATQLYQFTLFKNGNATSVRCFSTAINPTTAGRVAIGPVSMSSGSYQWEVRQTAGALANPQILVRYGSPLN
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