NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208303_1005159

Scaffold Ga0208303_1005159


Overview

Basic Information
Taxon OID3300025543 Open in IMG/M
Scaffold IDGa0208303_1005159 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4500
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)37.1Long. (o)-76.0972Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075351Metagenome119Y
F079234Metagenome116N
F083275Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0208303_10051593F083275AGGMAIVRNLLGGQRMTRPTPQEAGQTLGNAIRFQLEFMMMMLQADRNDHAARAYDRIIALCDQAGQPVRKDAA
Ga0208303_10051594F075351GGAGMYDEDIKIDADANALAQLIISIVQAASKSETDAKIEELQAKIDSLENQIEEFDVADHSYDIGEIAVEHINSYGGFTEMVTEVLDEYDFSDKETGVASGTTFTVTVD
Ga0208303_10051595F079234AGGAGMVIFQKLNQLKDHGDTLGYYRFEVNLHLEPRPNYGYEVRFSVEYRATESDSTEYKYFTRDKFEDTDLAFEETREFVLNMPSLDEHRRQDAVRRSEAYEERLLEDAAHEDDPILKQHLLDKAAREANDRKQLLGLFYKQGYHITAQ
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