NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208303_1007622

Scaffold Ga0208303_1007622


Overview

Basic Information
Taxon OID3300025543 Open in IMG/M
Scaffold IDGa0208303_1007622 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3519
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)37.1Long. (o)-76.0972Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045773Metagenome / Metatranscriptome152Y
F053312Metagenome / Metatranscriptome141N

Sequences

Protein IDFamilyRBSSequence
Ga0208303_10076222F053312GGGGGMSYKVLNDAVGLIRDETPLWEGSYQELPDATKDGLIALWLITHPTWMDDVFPHTVSDKRLLALEAIYSEDATSRMAAAMFRDAAERNAKDVDNDAYLSEALDDFEAILDTPDFLEEIKHQIYLYLEPSMEELVIDSFQDLNHLDRILLGSH
Ga0208303_10076228F045773AGGMSNVINFPTTGVTAAKSFCKCGNGLEYWIGNDGNAYGICPHCNIGVPCEIDIFEEEDYE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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