NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208303_1013510

Scaffold Ga0208303_1013510


Overview

Basic Information
Taxon OID3300025543 Open in IMG/M
Scaffold IDGa0208303_1013510 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2457
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)37.1Long. (o)-76.0972Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002421Metagenome / Metatranscriptome560N
F002794Metagenome / Metatranscriptome529Y
F048950Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0208303_10135102F048950N/AMTLEELISAIERLQAVYDSMVDQEQHEARQYVRWAIKHLADKIYMAAL
Ga0208303_10135104F002421AGGAMKTCTVCKGTIAYPEIQGKTHFVCDGRVPAKRHDPFIQGMIASQSSADARWTRIEQNQVDAAIAHVAKTKGIFTADDVWQHLGADFPVTKGLAGRLNAASRRGIIRNTGELSYANRGGAHDHAQRLSVWAGI
Ga0208303_10135105F002794GGAGMSEGVAWNQGELSEETRKLVLEHTEMINHNMAIFNLIDEIADTRQNTHASIIRRLQTMKNQLSLNEPMPLYDVTTLDLAIKALQAHS
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