NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208303_1016613

Scaffold Ga0208303_1016613


Overview

Basic Information
Taxon OID3300025543 Open in IMG/M
Scaffold IDGa0208303_1016613 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2157
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)37.1Long. (o)-76.0972Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038862Metagenome165N
F050749Metagenome145N

Sequences

Protein IDFamilyRBSSequence
Ga0208303_10166133F050749AGGAGMIESRFLDKAAATELLNNNWNSNRKIHRGLKDQHVKELAFKIKQGRWVVDAMETPMLVDTDGVLYNGQNRCMAVILADQGVVVQCRIESPEKCQRLYASLDLGKARTVADITGLNQSNIVLPILYLMRCAGLEGRLKDEATVSRIADTYMGDILHHFNQNTRWVKNNRCFNSVQFKAAMAYCVYTRVLPDYEAISVLDMLQNDKDFLWPSMYRNYREQIMFPNGKLNTGGKTVSNDKFCRGVYLLERRKKDQSKIQISSGFLADLNSNVRRVIRMAAEE
Ga0208303_10166135F038862GGAGMSDKAWHISYLSAIVGPCAATTDDGCMAWEDEEKSDFVMRLLDRDNDAKNLLVVIQPEMNELQLYTVSGYCVANDLPYMIKDWDALSAEGQKEAQKTRH
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