NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208303_1024358

Scaffold Ga0208303_1024358


Overview

Basic Information
Taxon OID3300025543 Open in IMG/M
Scaffold IDGa0208303_1024358 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1678
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)37.1Long. (o)-76.0972Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047656Metagenome149N
F056176Metagenome / Metatranscriptome138Y
F105091Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0208303_10243581F056176N/AAKALDPLAIKLYEGRDILKLVSREPCTPVAESWTKVQEILVNVT
Ga0208303_10243583F105091GGAGGMALKYDYTNIDCSSWSKEDHEMAHNFCWTLMAVEIQNITEKNLEEILFRVLYLQKVGHGPWTVDQEPKTIIGWLKKFIGYGTNVGEKSRAKWLRSRTNYLALDVENNVRYSFKELERLEDKDGQ
Ga0208303_10243584F047656GAGGMTIKTIEDLKKLMKDLGASEETTSDGFTFIELDSKNLKCPEASKGCKPHGWPRGNPKYKKQQATSSKQ
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