NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208303_1043902

Scaffold Ga0208303_1043902


Overview

Basic Information
Taxon OID3300025543 Open in IMG/M
Scaffold IDGa0208303_1043902 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1118
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)37.1Long. (o)-76.0972Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021299Metagenome / Metatranscriptome219N
F039389Metagenome164Y
F095250Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0208303_10439021F095250AGGAGMPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGT
Ga0208303_10439022F039389AGGAGGLAFLGDLGKVFGLGSSKQVLGEVGSFLGSGLGIEGAGRRAGEALAGATSSLSTADQPFEQSALPTGDPKRGMAQETSRSGSQTVNIIDTARGNGMTSQAGFGMLAPFISQAGRFLTSKSGQIATGVGTGVAFGQGFNSMTGTQRTTVLTQSRRNKAKVRQLVNFMGIEGTADFLSQSMNVNVTPNDVVNLLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMTRTTRRSPVRRASSTTLIKN
Ga0208303_10439023F021299N/ARVGKLLNSVKGLEWDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLHYAIKQQNGAMHPPTEKLGG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.