NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208078_1002582

Scaffold Ga0208078_1002582


Overview

Basic Information
Taxon OID3300025544 Open in IMG/M
Scaffold IDGa0208078_1002582 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 deep-072012 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4645
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F096991Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0208078_10025822F096991AGGLKRRSFLALFPGALAGAAFLPLFDFHPKTLAQSPDNKDKKAGNLVCWLDVCAPFIVEDAESGLHSEIVLTSDTFVGAKGYADGADATEYEIYLYDADGKAVGAEGVAKRLVVPAMHMTVLSLREILGDSRKFWGGMRIRLRPKGRQPMHASDLFSSAFVRWKTESSFDNVHANPDPLQWQRPDTFFYSMPFPPLAEYESVFSLFNPYAERSLGAITLYDQLGLKLREVPYELKPRSSLLFDLRQGDFVSDPRRAFGETSLRNHSGAKLLNPGGGTIAITNQQGSVKGFGYLLIKRTGTSRFSVEHPIHQAPFKPVRAPAPFDAAGRFKAKNILYTPLVFRSKRIGGVTLESRFHFSSGAPLEEFLWLNPFITDTEGNVAWQATAETKLPATISANQIERGVIKLGGMQSCMLDCAQLPLPKTFSGGLSLAVAPMTNHTLMKIETSVKEWGAHAFTHFRPGLKSARGYQASPPRGGLATDYIAAGARVERNGNRMVRDEVIGVMNIDDKGISGRPTLEIFTSSGLLTRIDLGDVPGFACRHYLLSELSSGKIGPHDLSLRLVDERATLLMSVVHLDYVRRDLAQDHGSDRFSTFNDYSCDASV
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