Scaffold Ga0209225_1001088

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209225_1001088

Scaffold Ga0209225_1001088

Overview

Basic Information
Taxon OID	3300025546 Open in IMG/M
Scaffold ID	Ga0209225_1001088 Open in IMG/M
Source Dataset Name	Sulfidic aquatic microbial communities from Washburn Spring, Yellowstone National Park, USA - WS (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	28158
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (72.97%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Unclassified → Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Washburn Spring, Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006925	Metagenome	362	Y
F008219	Metagenome	337	Y
F029929	Metagenome	187	Y
F069685	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209225_100108811	F006925	GGTGG	MAVEVSVLENFGREAELRKKWLQMWERLGVRILKLPKWMQEIVLEDVNTAIKNRLAIMEMIQNAKRSH
Ga0209225_100108825	F069685	N/A	MSEEKPTEDVEVLKARIAELEAENEKLKTTMAEATKTLTAYVEREREAAIKSILEKTTLSKDELEKLNLSQLRLVQKGIDSVKGTVKNVRSAGATTSEDENRLTVGCLYHKEK
Ga0209225_100108830	F029929	N/A	VPIFQQSVDSELYEWLLKELKRRKARSIQDVIRQVLRETKAEAEKQYG
Ga0209225_10010884	F008219	GAG	MPRYLVEIILVVDAKDFEEARKIADHIIDVPIPDSTAENAIESLRVEEIVQIKNQKSG

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