NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209556_1003546

Scaffold Ga0209556_1003546


Overview

Basic Information
Taxon OID3300025547 Open in IMG/M
Scaffold IDGa0209556_1003546 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_150m_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6848
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006870Metagenome / Metatranscriptome363Y
F007087Metagenome / Metatranscriptome358N

Sequences

Protein IDFamilyRBSSequence
Ga0209556_10035463F007087AGGMKKLLLVALTIPNFVLADDFKLVCEGEESNYRNDVLENTSKASLTLHVRDDSIVIDSMTYKNKTFDYGAIKGLSKYVKEDAQIVLETTQVSNECDTALLNVRLNRSSGMIESTAKRIGACDGSSFTTSTNFKGKCK
Ga0209556_10035464F006870N/AMKKIGQIFLLALSFVLISQASSIETKLSPQGSDKYNLLIKGDAKSSEKNLRDVFQNKVNEVCGTRFEIISIKTDHINQEGTNKNVLKGTFKCFVNSQM
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