NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210142_1000561

Scaffold Ga0210142_1000561


Overview

Basic Information
Taxon OID3300025552 Open in IMG/M
Scaffold IDGa0210142_1000561 Open in IMG/M
Source Dataset NameWetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8079
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location NameUSA: San Francisco Bay, California
CoordinatesLat. (o)38.080353Long. (o)-122.108833Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000116Metagenome2132Y
F024856Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0210142_10005613F024856N/AMTSFFVQVWTLPQCAHVNFCVFTFAIGQRAASMVRPVSVSFDVEGQRTSRLLILRPAFALGRLGGSKKNRVAMSESINDASLAGVVWRHLHSYSITDSEANETFAHLSGDVRENKMFVRKCDTKHRPGKHHHNGALQFDGFFGIHLVVDLQGASVRRRFNEPAGIVALQS
Ga0210142_10005618F000116N/AMAKPQQGTRTSAMRQIAPPPLSQHLRELVSRRDAWAVIARNLIPVVGIYAFGWSAALSVFNYWFDGLTALIAIVTALIPRALRETKSKSDGIIRTVVGAVITWIVLVVIVGLPYWIVLIPLHDLLLGTELRRQLAQSPALWFTFGSLAASHFWKAFRVGYDTMPDKDLKQRARWDIYLLILRAVAMFIMAAHGLYFILVPLMALLLSYLEIWPERALGAVFGDPSRLWEYDPGDPTTDRRRR
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