Scaffold Ga0208080_1048118

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208080_1048118

Scaffold Ga0208080_1048118

Overview

Basic Information
Taxon OID	3300025553 Open in IMG/M
Scaffold ID	Ga0208080_1048118 Open in IMG/M
Source Dataset Name	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-092012 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1116
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location Name	Barrow Environmental Observatory site, Barrow, Alaska
Coordinates	Lat. (^o)	71.2999	Long. (^o)	-156.61	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003300	Metagenome	495	Y
F021887	Metagenome	217	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208080_10481181	F003300	GAGG	MLSDDEFRAKLRDVLTRSGLSMRALSAALGRDPGYVAALLDPSRPSRARPTPADLLRASDVTGIPFVELLEALWGIEPSRLADELGRLGLGGSADTRLAGLSDAERAEVRDFVAFLVARH
Ga0208080_10481182	F021887	GGA	MVTYYSVMVTRMDGGVEPDSLAVLRRRRAGRDDLPALPLAPLIAEYTATFGSTWRPVTRRKHADDFARLIDWLEANGQPVTTASLGFMTLVDYVGYLRVRPKVSGVWRGAPGALGRSLRHPPVQTLSANSVNAYVRPLRSLVIWLVDEGLLSRDPFRRSRRRAALNPLLPSEETPTKSATLDDIRALEAGCAGDRSLDLRDRAITSILKTTAARNSGVRLLRLEDLDFERSLIRFRRGKG

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