NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207874_1005020

Scaffold Ga0207874_1005020


Overview

Basic Information
Taxon OID3300025571 Open in IMG/M
Scaffold IDGa0207874_1005020 Open in IMG/M
Source Dataset NameIonic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-1-D (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9306
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Source Dataset Sampling Location
Location NameJoint BioEnergy Institute, California, USA
CoordinatesLat. (o)38.5402Long. (o)-121.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026032Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0207874_10050201F026032N/AMFCEGYDPAFPTDLRRMTTGIGGWQADDPPTIELTLAVGLWSLEAGRIACRFGIRRPGDDVVYFGEGDTTVDEPGEMAIMPLRLTVTLDRPGVYWAICEFDGRPLVQVPFSVSEAPPPAAGGQPAPLP
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