Scaffold Ga0209430_1000017

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209430_1000017

Scaffold Ga0209430_1000017

Overview

Basic Information
Taxon OID	3300025575 Open in IMG/M
Scaffold ID	Ga0209430_1000017 Open in IMG/M
Source Dataset Name	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 11-33A (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	317531
Total Scaffold Genes	285 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	34 (11.93%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Paludibacteraceae → Paludibacter → Paludibacter propionicigenes	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location Name	Barrow, Alaska, USA
Coordinates	Lat. (^o)	71.290884	Long. (^o)	-156.788063	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F076572	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209430_1000017133	F076572	N/A	MKKLLISLFAIFFIVGCTTTTTPACEQDHTFSMEFTNGSNNPYDLYINGNFEQIMDAKTKVTYDIPAGYWDAEVVQRSGFNPDQIVRDYSNTYESCTDYYIVF

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