NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209304_1000219

Scaffold Ga0209304_1000219


Overview

Basic Information
Taxon OID3300025577 Open in IMG/M
Scaffold IDGa0209304_1000219 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42088
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (20.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000898Metagenome / Metatranscriptome845Y
F012505Metagenome / Metatranscriptome280Y
F043412Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0209304_10002192F000898N/AMMQIYKTVFDTEQQGKDVLISKGVWQEVTEEGVTTMQFTNGTAAVVNIGKVVEIPGTYDPDGHEITPPVYYPGWAYDVMSSDLLDFGTYEVFPGDVAAHSFMGWPRGAEVPPVDQ
Ga0209304_100021942F043412N/AMEMTKEELQRKVEELTQSLDSFNKNTEMLKQDLVVAQNALKVADRPKITEDQMTEIHDSIYTIVNNVDFTDCNNYDMDFEIDYDNRVAVSNMEFCNSDEIADDLCSEIGSLFNVIKDQDE
Ga0209304_100021943F012505GAGMIYNADEVTFILAKTLDEARQWAIMYCDHSHEIIVRGISDIKYQY
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