NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209304_1000401

Scaffold Ga0209304_1000401


Overview

Basic Information
Taxon OID3300025577 Open in IMG/M
Scaffold IDGa0209304_1000401 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29837
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (12.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046384Metagenome151Y
F055737Metagenome138Y
F101156Metagenome102N
F103281Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209304_100040116F101156N/AMKKEVTVEYDNIALVVVGEYEKGQDGSYMYPDFSSDFNCFKVLCGGQDIIDILEQEVIDELENQAIEIIEEQW
Ga0209304_100040121F103281GAGMCETQGLKNDIIYQFYYITLYDYEKGTELDELRIILYDYEDKEMYLECEGIKLAIEQIEFTQLIKNIIDDNERD
Ga0209304_100040129F055737N/AMTRNVRVAISWCLKNDIKVIVKPLTRTRRPEVKLEIHKQGRIQIGNETYRQDKKLGDKIQELYLYLYKTLR
Ga0209304_10004015F046384N/AMKNEPIHETVKDLYTFKNMQIDALQKELCIANKRITNLETFIFELCDDSCPESYKDIVRKEVLNDFTRD
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