NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209304_1007258

Scaffold Ga0209304_1007258


Overview

Basic Information
Taxon OID3300025577 Open in IMG/M
Scaffold IDGa0209304_1007258 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4500
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.69%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047678Metagenome / Metatranscriptome149N
F085360Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0209304_100725813F047678N/AMELTEKQIEQISGAIITSFVNLHFLEEAKASGLFRHRTKNNVKKTIDDLIEIETNYYQKVEEVDEKDLGDKLVANKLEFVKWLLNEFDFNDYTKIQEVCIAYSKDKPKMVAASDKINLEHGAKIIE
Ga0209304_10072584F085360GGAMAKIKNKLKPFKNCDNKAQSYCFNKGFVITLEPSGANYKVKYQRGHKAQYYMQGKEFDLQQAYQSIWDLYTKIYEYDKQK
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