Scaffold Ga0208546

Basic Information
Taxon OID	3300025585 Open in IMG/M
Scaffold ID	Ga0208546_1000170 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208546_1000170 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30312
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (48.98%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

30312

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (48.98%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004049	Metagenome / Metatranscriptome	455	Y
F005633	Metagenome / Metatranscriptome	394	Y
F007260	Metagenome / Metatranscriptome	354	N
F009603	Metagenome / Metatranscriptome	315	N
F013412	Metagenome / Metatranscriptome	271	N
F013879	Metagenome / Metatranscriptome	267	N
F018171	Metagenome / Metatranscriptome	236	Y
F061802	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208546_100017010	F004049	GAG	MEQGEGEEAVNNPIDPAAFVFKHKRTGQVVVAPSERWHEYYDNKENWEHTASINACLAIQYILSVKPRERNRYLRSLTEKK
Ga0208546_100017018	F013412	GGAGG	MRHLWARGFGKLYRDAEVITTDDGRRFLLAVIEFDQRTLGNGKPYAQRVQFRSFDNEDIEIADQLLAGTYVMFDGDCDAVADKSQTGWWYANPRVTGRINEIHHAS
Ga0208546_100017029	F018171	N/A	MANTQGKKYIFGSPATLAIYDAAGNPVVSGYVSPDIESYDITHDCDTEEVRNSSGEVVGHITYNNRITLTVNFVPADATTVDNAKLAAAIADGNGTATLTGAPVIEVGGFTDALNAPGAGSPSPGGRWIYAGGGSIKTTNTGKATGTITLKRYAGISATGAATNL
Ga0208546_100017031	F013879	GGGGG	MRPTITVDTSRFDAAWREYLPKTRRSLADAINSRTFFLMLRLYILLPPKSPQAARNKILDYFNRPVGAARFDKKTGKKVGRSRQLRLVHLIAQAKNAKAGNEGLYGEDMRKAAAKLRRRAAGSVGYLKSAVVKAIRRLQPTFRQFGGTVRAKKGSAQVRTVSGNQALINLANQYGLPQENVSVHRGSSAYGYNATAGLNPHSSVRLNIGLANDQMGAVESIYSKAMQQAYNDEAKALEDHITAKLQEDGESLESKGVTIK
Ga0208546_100017032	F007260	N/A	VNLIATSLQLGMTVLQGAMGNPSFIWQGSLVRCIPAAITDANAVINGGFNDNVQVRLLVKLADWRLADSTLVTVDATVWSADVGSTADRLLQESGSLILQENTDAIQLTFGKMIPVVGRTVTYDGRSLRILSAKRDGTGAYYVLELGAKTK
Ga0208546_100017042	F005633	N/A	MRLATTIAVDRNGKSKIVSGPDVDATLQRDSFNTASVPEGGKLILWIQGALAPKVRKG
Ga0208546_100017045	F009603	N/A	VFTYTVATKRAYLRTTYASKGALTLLEALTAKLTVSANSQESGQIVRQTSSSDVSVEFAEPGKGTAAPMEMLEMWESLLGDYDYAVTLLAGDGVTSPTDLQIYNKMLGAILIATTRYFGDFTQFRREPTTRMS
Ga0208546_100017047	F061802	GAG	LGSGRLFEDVTPDRSMEILNCQKPRGLEALRQNRIAIKAIERDTALRFLPIADDKPSRIDGFVWNQNTGTITGIYEVKSRNYSRAKLESTYGNQWMISWSKLQAALDITKHTKLPFWGVLHLEPDGIVLMVEIFNENATWGCNVQLRDKLVDGVNERMAFLNMGEARKHSIADNQTELF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208546_1000170

Overview

Ecosystem & Geography

Associated Families

Sequences