Scaffold Ga0208546

Basic Information
Taxon OID	3300025585 Open in IMG/M
Scaffold ID	Ga0208546_1000203 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208546_1000203 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25781
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (15.38%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

25781

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (15.38%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021292	Metagenome	219	N
F033771	Metagenome	176	N
F036299	Metagenome	170	N
F045056	Metagenome	153	N
F067661	Metagenome	125	Y
F077449	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208546_100020310	F045056	N/A	MKFTTEIEGDILGVGTDVTKEFSLSQSPDVNAALIRWMQDVIKLTVEGIERVDAKATLNLRQSVGFAELPVEQKVAQVAMEMASYWKFVEYGVNGVRVNRGAPFSFRSINPSEKDVADIRKWAIDKGLGIPADEIDAAAYNIAKSIKRRGIKGRPFLNPVLSDAKLDELVSSIAEVVGKEISISMNV
Ga0208546_100020322	F077449	N/A	MSSWVTIKNDLIAFAESHLQLNAVGFGDPLAIGTDNVINLRTTDRDRVIYPLLFVDAQSASMPIGATNLTVSVLVMDRVADLRGVDATISGSVVYRWTDNEDEVLSDTLRIMQDFVAEFTDDPDRDYTITGAVSATRFVEARDDKVAGWQATVVFELPFSRNVCQIPTS
Ga0208546_100020325	F067661	N/A	MPTFRKYAFNDEATFTALPVPQGFAVPLGEIDGAYCVDILWDAEPQADYLPFECWPPPVGVHTFLGWDEQYGKDYTERDDLNNTLNED
Ga0208546_100020329	F036299	N/A	MLPRSTLIFSLLLFACCRKPAEVIRTSAVVHTDRQVVTAGSLTELTLPDLCDSAGIVRRFALRDSTKTSVLSVANSGTGIVIRLRRDTVVERLILRDTTIVERTVVVQPKKRKSRWPILLVGAILGLLASVVLFARLR
Ga0208546_100020332	F021292	N/A	MNHDIITHTPITMDNGNIVKAYIHKLPSGMYAMHADYPFQPNSNSTRTRQIVDALFRSQHRDWFRFIRFQRSSTPLPMPKLNNQ
Ga0208546_10002038	F033771	N/A	MSLLNKITVDQFQRIVSIEANSIYTTSDKKIGVVAVIDNMPIEQVKKMTIAEVNKRYAEINAASKSLSTLAAKQYAKVGGKWYRFEWFIDEISAGQLVELYSYDMTSEQGVIDNLHLILATLSRECRVWKWWPKAYDGKGHKQRAEAMLQMNMGDVWGYTAFFLQLSEPLLTIMRKSLTEQERKMTTAKG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208546_1000203

Overview

Ecosystem & Geography

Associated Families

Sequences