Scaffold Ga0208546

Basic Information
Taxon OID	3300025585 Open in IMG/M
Scaffold ID	Ga0208546_1000646 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208546_1000646 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11994
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (61.11%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

11994

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (61.11%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F003134	Metagenome / Metatranscriptome	505	Y
F005697	Metagenome / Metatranscriptome	392	Y
F024931	Metagenome	204	N
F025683	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208546_100064610	F003134	N/A	MTQWQPVWKVTIDGVDYTDAILANLVIRSGRTNIYEQAQAGYANIQLIDLDQSAIPVNVNSSISIQVQNTSAAYVPIFGGTVVDIGLEVRDVGSTMFTQTYSITALGALARLPKILTDGVLSKDYEGNQILSILTDLLINNWSEVSPSVTWAGYDPTTTWADAENTGLGEIDTPGQYELAARSSDRVDVYSLVSALATSGLGYIYEDANGAISYADSIHRRDYLIANGYVQLTANQARAAGLRTETRAGDVRNNLTIKYDATSSSERSASDPTSISQYGNLAQIITTTLHNSSDATAQANFYLALRKDPEPIFSEIVFDLTNPELDNSDRDDLIEVFMGMPVAVNDLPTNMGSIFQGFVEGWAFQAGYNRLSISLNVSPTAYSLQSVEWGEVSNTFNWSGVSPTLDWQRATIVT
Ga0208546_100064615	F025683	GGAG	MVLDLLDPQTLGRLTGLAILLIMGMAVGYAKGFKDGKREGLARRKAMIRHISNKAVK
Ga0208546_100064616	F005697	AGGCGG	MGFLDNYEASRERLERWLKTFPNGRIETRIVEFSAEKGFVLVEARAFKGIDSVLPDGVDFAFGYQGAYQQNMKRWFVEDTVTSAIMRVQQLVMGGAERSTREIMEQVEKTPAKVANADIDYWTTKHGEIPSYKTAAEAEQSGIPSLGSSMDEIAKQLGGQLVEEAPQCKHGHMVWKQAHEGAPKNWGGYFCTERTKATQCTPRWYVLASDGKWKPQV
Ga0208546_100064617	F000403	N/A	VEATGVIVADYSEIIYPQSMTAKLLLNGEVVDEYKIEQCDKCSMLTRLDPFGYQKQFGGEKVIWFCKGCR
Ga0208546_100064618	F024931	AGG	MQLTHDEQMHCVLGAIDIHKKSGNLLESPAHLRPEMAIFDHIVERAEAIGSEWVVAKYFNLPFDPYENKWKVKADVGNAIEVKWTKYDMGQLVIHEYDRPTDIAVLVTGKAPHYYIAGWIPIAMAQRPKYRHSKQPNWWVSQINLQPIENLRKSNYGNTAI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208546_1000646

Overview

Ecosystem & Geography

Associated Families

Sequences