NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208546_1001075

Scaffold Ga0208546_1001075


Overview

Basic Information
Taxon OID3300025585 Open in IMG/M
Scaffold IDGa0208546_1001075 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8741
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F001507Metagenome / Metatranscriptome681Y
F005092Metagenome / Metatranscriptome412Y
F083931Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0208546_100107510F000808GAGGMEYTYALTTSYDGELVNTLRVSDMLEAVDAWTKCVDFGDAKEYATYNLSDPLGKMYTKTFYRNGEVSIR
Ga0208546_100107519F001507GGAMTLKYKPYTIDELVTEIYEDNLDHFEFMENMNGGDCDCDLHHTMNTIMRYWDV
Ga0208546_10010754F083931AGGMTTTTYTDFPFTSHGVNFISRVYSNSPFLPSIKQLPAGVFETMNEQAVSEMIGDPSLLSTDELIRELEKLNEGGSHAFILLGGTL
Ga0208546_10010758F005092AGGAMDKLEYALKQIRNCDYCGGKGNLYYGSGEDYDFEVCPCNTYEIILDEDGSVIWDNGLLSEPELFRTLEAL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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