NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208546_1013086

Scaffold Ga0208546_1013086


Overview

Basic Information
Taxon OID3300025585 Open in IMG/M
Scaffold IDGa0208546_1013086 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2158
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019635Metagenome / Metatranscriptome228Y
F031455Metagenome / Metatranscriptome182Y
F081253Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0208546_10130861F019635GGAGMPQIRIYIDGDTEQPTPTPTPEPPADLQAEIDRINRTLSDVMRRIAKIESDVRGVRMRLIEDDAEGQGP
Ga0208546_10130864F081253AGGAGMSLIQTPEELADAIRNDPQRVAECLHRINRFGGQAIDCSVLQHSLAVYDRLAGASVNVRLWALLHDCHEIITGDVVRQYANSLLTSHQTEIDCQLRDALGITLTLDNAIAVKRADVWRGACEFQEVSAGRPVYQHESPTIFWVDSVRALLSEVAR
Ga0208546_10130865F031455AGGTGGMRLHPVIEQHGLHKLAVGKSVLLRIPREQFTPLRRVIAFYNECTDDGTALRTKIQPNGITVSRREIVRIADSPDWRVGTSKPFVCADRLSLEHAVARANEAAKQLRRGYRFRVVVESGKTHVLKTLCRCRRVIHREEQYLRIVGMIRKMGVDCVGNVCNVELRDVRRVQRNFKHSLRFRAKQLDSNTFQIRRTR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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