NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208496_1013701

Scaffold Ga0208496_1013701


Overview

Basic Information
Taxon OID3300025591 Open in IMG/M
Scaffold IDGa0208496_1013701 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - MA2M (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2265
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013499Metagenome / Metatranscriptome270N
F021930Metagenome / Metatranscriptome216N
F022867Metagenome / Metatranscriptome212N
F051691Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0208496_10137012F021930N/AMSDQDLRKVTELLREVESEEREKVMEAAEQNLLDSLRSVENITKAIDQLVIKETKRRHDFKDLLTTIKSIVVKSKKETIDGIVEIEKSGNRPSFLAIAEKLAVQLSEIEYIISCQSLEQMGELMKIVTSEDYEEAREKIDLRFTK
Ga0208496_10137014F022867N/AMELDHQIREQLTSLASNYHNRFWMKSYILSCMVMENAAQNIQLGIIGGKGVTTILEYNIEISRQIDNLSEILRHTNDITPDMVPWMTSILGHMVFLRNTIHGVDINDLVGLLRPLQLIKLGVTESRIGMEEAITNVDKKSLTEKWENELNLLH
Ga0208496_10137016F013499AGGAMSEVMKDIRITISGIKGLIMLLQAHQRELASKGEPDPSEGSLETARLAIDQLKEKIEAIVGPEEPTGAEGFEVEVHESEDQSQTE
Ga0208496_10137017F051691N/AMNDQGIIEEIDRLGEIAGIKKNMCKVMPPLGHRVRTLHTQFTQLTDTEKDLIRPRLENALDKILIMVRKVNHNFQEEEERNTYQDSLINE
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