NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208248_1025942

Scaffold Ga0208248_1025942


Overview

Basic Information
Taxon OID3300025595 Open in IMG/M
Scaffold IDGa0208248_1025942 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - MA5M (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1378
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013086Metagenome / Metatranscriptome274Y
F014736Metagenome260Y
F050374Metagenome145N

Sequences

Protein IDFamilyRBSSequence
Ga0208248_10259421F050374N/AMKSMIDYKFIGWNNKDGSDKVWGAIYMEDRTNPRPKVLIFWGRRGHKLQTKMDREGWDLDKLVTSKKEKGYKTLMDYELKQVYPEFLNDLEKTTMWALLKL
Ga0208248_10259423F014736GGAGMNTPIVPDNKIKMWADPRFQILAEVDKLLNGDKTWAGFEYTYHPIHPLKYRPVAEKVRKALDELKTEYGVEE
Ga0208248_10259425F013086N/AIYLCRSVKEFGMNEPELIGYTEREEGFYPLYAPPKGSIVTHAFILCKYCNGSISPCMGPRYDAVCLTCYEKDPDAR
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