NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208768_1024906

Scaffold Ga0208768_1024906


Overview

Basic Information
Taxon OID3300025601 Open in IMG/M
Scaffold IDGa0208768_1024906 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1823
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAce Lake, Antarctica
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006056Metagenome382N

Sequences

Protein IDFamilyRBSSequence
Ga0208768_10249062F006056N/AMTLEITLGGSVIDLSLFDYSLAVAHGRSDVTANPTASNAQLVLRGDTGPLLDLADTVAISFDGVDRFTGAISDLNVSFISTGTPTAITTITAMGNLAKLGYTDVGASGYIEQSARQRVTGILDATGLDYLNAGDPDITLYAILEADAQPSTALDALARIAQGTGATYYDDPTGRIIFEDYGNRGSTTFAGIWANQVGTWSEAEGTWAEAPLFPPSFNLEAPGVIFAPTWAKTLTPLINDVTVTYGPDLTVNQTDSASIDQYDRREYQLDTGIKTLSDATTRAAGIMTAQANGLWNLGQISVLVDQLDETDTTSLLELVSGDLVTVRGLPASGPYQDFNGIVEGWTDSYNNGQHIMTLSISDPRFSLQVLQWGQVAPAFTWGEVGAGAQWFEIVTNSDLVRL
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