NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207930_1055036

Scaffold Ga0207930_1055036


Overview

Basic Information
Taxon OID3300025604 Open in IMG/M
Scaffold IDGa0207930_1055036 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-092012 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)983
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021887Metagenome217Y
F042085Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0207930_10550361F021887N/AMLTRSDGAVEPDSLAAFRRRRAGRDDLPALPLRPLIAEYTATFGSTWRPVTRRKHRDDFARLIAWLEANGKPVTTGSLDFMTLVDYVGYLRVRPKVSGVWRGGPDALGRSLRHAPVQTLSANSVNAYVRPLRSLVIWLVDEGLLSQDPFRRSHRRAALNPLLPSEETPTKSATLDDIRALEAGCAGDRALDLRDRAIVSILKTTAA
Ga0207930_10550362F042085GGAGGVPPADDEFRARFRDVLARSGLSMRALSAAMGRDPGYVAALLDPSRPSRARPTPADLLRASDATGIGFVELLEALWGIEPLRLADELGRLGLGGSADTRLAGLS
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