NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207954_1052123

Scaffold Ga0207954_1052123


Overview

Basic Information
Taxon OID3300025606 Open in IMG/M
Scaffold IDGa0207954_1052123 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0M (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1109
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029327Metagenome188Y
F050111Metagenome145Y
F074332Metagenome / Metatranscriptome119Y
F078214Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0207954_10521232F074332AGGAGMSQNHLAQYNVEELQGYFSDFHKDFYGMRPRFATPEQWRDREWLEASINSIHDAMDAMKTTFSGREQLRSEGWIIDEADFANIIDPEEYANWSADQDAIYYGA
Ga0207954_10521233F029327GGAGMGFFKNIHFEILEWQGRGCSVEDTYIYFKDYVTYQDVVRIFAEETV
Ga0207954_10521234F050111GAGGMEKKSLFNIRYTMKPKDIMTFVSGLHDIQMDMIETVVIRKEREGFPEANLVIKHIMEKK
Ga0207954_10521235F078214GGAGMKISPFRLWLQRIYMEHKDEAMELGYTPCDSDTYFRMYKYWLKREYRHQQES
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