Scaffold Ga0209654

Basic Information
Taxon OID	3300025608 Open in IMG/M
Scaffold ID	Ga0209654_1000017 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025608 Open in IMG/M

Scaffold ID

Ga0209654_1000017 Open in IMG/M

Source Dataset Name

Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	206416
Total Scaffold Genes	220 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	168 (76.36%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

206416

Total Scaffold Genes

220 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

168 (76.36%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Saanich Inlet, British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Saanich Inlet, British Columbia, Canada

Coordinates

Lat. (^o)

48.6

Long. (^o)

-123.5

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001588	Metagenome / Metatranscriptome	667	Y
F006020	Metagenome / Metatranscriptome	383	Y
F015039	Metagenome / Metatranscriptome	258	Y
F023291	Metagenome / Metatranscriptome	210	Y
F041087	Metagenome / Metatranscriptome	160	Y
F064106	Metagenome	129	Y
F073419	Metagenome / Metatranscriptome	120	Y
F084742	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209654_1000017178	F073419	AGG	MAFFEATTEQKQLATIGREMMNYSEEYGKIHGLGPVTEDGLRTLNNLSHVGNALTHFGATFGTTAKDFSDEDRELIVSWMQGTITIDRKDR
Ga0209654_1000017187	F041087	AGGAG	MDLWDEVIHQIENDLEDRDTTALYEMLQRVPKDVLIAYLPEEREFIVSDN
Ga0209654_1000017190	F015039	GGAGG	MAGADNTKTVYVTVALEVLRDADIQDIMSECDYSFEHSDIVDTELMGETDYA
Ga0209654_1000017197	F001588	AGGAG	MQNTNYVFLNATDAAIVVTVNNTVVGAAYTAAQLAALFTANNVNVNTDTIMCSSSVDFAQEEGFATDSCAHNIIEAALEQL
Ga0209654_1000017199	F064106	GAGG	MQITQALALQHCAQQLEYVTQTQTLCIDTAEELVAVMQQLLAANSDYAAIVAATRYSNDEVNESKYL
Ga0209654_100001720	F084742	AGAAG	VPKNKLPEEVIKHWPEIFKDVEITAIPIEYINNIYVYFHDGKVWQIDMDSQSNNDVSPLEESLEAFLEQYNDEIEHVDFRLHTSKIVKDIKNRTKSFMKKRK
Ga0209654_1000017220	F006020	AGGAG	MRATDIVRQVLDLLDQVEGQHDIQPGVIPDDTCGAEQGEPIAGRFKQIFAMLDAPSTSPLANSPNEVVAGVDAVTTLAGGGVNGPKDPADIRVKDPRGFE
Ga0209654_100001742	F023291	N/A	MNLTIDKKWKRIGISLSGGADSALLAYLVLSQTNADIYFTTQIRLWKTRPWQRYIAQEVVEWFRNRFDNRIEHIEGFIPPEMEEPHTTYITDEYEKTKPGNRIILRAHNEFIAHTHKLDAWFAGVNKNPDIDIPGALAERNEGVLPLHTTHMGVDICHPFVYTTKDWIIKQYYDNNIEDLLNLTRSCEGEFAELDYTTYTPRQFVPICNECFWCKEREWAIEQVK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209654_1000017

Overview

Ecosystem & Geography

Associated Families

Sequences