Basic Information | |
---|---|
Taxon OID | 3300025608 Open in IMG/M |
Scaffold ID | Ga0209654_1000623 Open in IMG/M |
Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 33121 |
Total Scaffold Genes | 51 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (29.41%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Saanich Inlet, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005194 | Metagenome / Metatranscriptome | 409 | N |
F071023 | Metagenome | 122 | Y |
F099114 | Metagenome / Metatranscriptome | 103 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209654_100062317 | F099114 | N/A | MALTIQDQPTTNLPEPSFAPIEYLVSSTNTTESGFKVVASLFTDPSGDNTKIATLQLNTIPTATQVVTDIQNIIQSFISSDYSVLAGDTVDISQSALKDFKIAFQEYYSGALQGSAVSGNTFESWNSSPKYIEWADLSGGTKDYQNWSIEDASAETDKEFLNGFEQQADWFNLSSANNFLKVRTEQKYQASWIMRQNLSDTYKIYLKTLDSTFTNILSTTMTASNTAGLYTLDVGASEVASHSWDVTPVMTNVKYYALRILNFTEDVWATKTIMFEIDDCENTYTDYELHWLNRKGGYDSFTFSGKSNQSTSINKTFAKYNTRTIGASSITHNTYAQRKRAFNTSLRDSYRLNSRLLKDFEVEGLEDLFSSPEVYWKYGANFVAVNVTGSTFEHAKSENGKVYSIEVSMEVDNSDKRQW |
Ga0209654_10006232 | F071023 | N/A | MNKGFKKFQEIFMFSDSEPNEVLIGLLHAIILPFAMFELGNPLAIMQILASFTGLFQLYAVLYNGSLKLRKIAVQLATLVAMGTCINYAMEGLMKGSHLGWLLILIFALWNLIRVTKEDHQRQIKVIINGNK |
Ga0209654_10006238 | F005194 | GAG | MSKSLTIKNVKTIMEGIKSEHPQINTILKGNVWDVDLTKDVTGSYLIYEVTNITPNGFNGIDYAIDLFICDNVTEINTESNEVSVQNECCLIALDIISIFENYNKASYADKDLALVLNKNWSIQPFTERFDSLYSGAAISMSLSSAYGYARCEIPV |
⦗Top⦘ |