Basic Information | |
---|---|
Taxon OID | 3300025608 Open in IMG/M |
Scaffold ID | Ga0209654_1000659 Open in IMG/M |
Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 32041 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (39.13%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Saanich Inlet, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F017811 | Metagenome / Metatranscriptome | 238 | Y |
F023826 | Metagenome / Metatranscriptome | 208 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209654_10006592 | F017811 | GAG | MSKKYAMLQIDAEVHQLLKEFCKNRGYKMNGLVESLIKEKVSPNVKPLPSNVLKTK |
Ga0209654_100065920 | F023826 | N/A | MSWSLFKANIIRKTNPKFNNNNINQVAKIWADEYDAAVKRGKDFINFESIQSGNKAIMETLFKVALLKGFTTPPGQNFSLVNEFGNGVKAYWAGAQMKPFPIPLIPAPGSIQNISVNSNVVVNVGTWPIYPPLRPVRKQETMVDMFILAALIHLFSIGGFIQTTSLYPSAPSPIPAPGVIPWTGYLVPPAIPIPNINFPSEDGSEPPGIEQPDTDINISDENGGDNIGQGNEIVDELDGNTSLENVISVSIPSDVDNALEIDKIVEDFKQQIQMGGTKCE |
⦗Top⦘ |