NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209654_1000746

Scaffold Ga0209654_1000746


Overview

Basic Information
Taxon OID3300025608 Open in IMG/M
Scaffold IDGa0209654_1000746 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30045
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (14.81%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045767Metagenome / Metatranscriptome152N
F060727Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0209654_10007464F060727N/AMKLKIRGEKYEVYGQLYILPTIKVTHDKYLYGYYTIDLVWWKWGLSLTFE
Ga0209654_100074651F045767N/AMNLKNTIRKNIQILEEEKKVSLTEQKIVKGRFSMVPKNINKNSKIQISKAFNGLMNEVRFLKSQSINQSVINENLIQVLTQMFDLEGPRFIDTVKDKLAEYLKGKLQLTDVEQEILSTAIGNTEMDEVPELFNNPRFLANKIVQAYSEEMGGKYSMMDINISQDMVKGLEDRFVDKLKPVIGDVNSNMELKLKDIRDNILS
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