NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209654_1001532

Scaffold Ga0209654_1001532


Overview

Basic Information
Taxon OID3300025608 Open in IMG/M
Scaffold IDGa0209654_1001532 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18141
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006699Metagenome / Metatranscriptome366Y
F058811Metagenome / Metatranscriptome134Y
F102789Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209654_100153215F102789GAGGVVLTKREFQEVIDQMNQILTKLDERIKTLESAKPARITKTTKSQEKDLTNE
Ga0209654_100153217F006699GAGGMLKRFDYKCTQCEHIEEHWTHSDNFVTCLECGETAQRIISPIRTHFVGHGWPDKDDKWAKDHERAARK
Ga0209654_10015324F058811GGAGMKAVLVDPYLKTIENVEVNDYTDISKHLQCDIFCSGGYDEGGDAIYVNDNGLHEESAFVYMPDVYPDPYAGRVLFLGIDAGGNSKDAWLDAEDVADIDHKFMARDEVGAMYYYG
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