NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209408_1001839

Scaffold Ga0209408_1001839


Overview

Basic Information
Taxon OID3300025611 Open in IMG/M
Scaffold IDGa0209408_1001839 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC107_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12753
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameHong Kong
CoordinatesLat. (o)22.28Long. (o)114.17Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039402Metagenome / Metatranscriptome164Y
F044014Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0209408_100183927F039402AGGAGGMSLTDYSSFEKEITDVPEPITLPRGSEVKARIINIREGVSDKNGAQWYSLVFDVPKEPLALEFNDFFWDLKDRDKLDEKSFIRAVRKFKTFAEAFGLDYSKPFDWEELIGLEGWVILGVRKTDEYGDQNTVSKYIAGS
Ga0209408_100183930F044014GGAGMNDEYKPRFSFEVTDEQKERADRLIGAYGTRKAMFGQILDDTLDLIDEYGGVIIGIVASGKIKPREVIPSLKKAEEVGKHGKY
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.