NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209504_1001589

Scaffold Ga0209504_1001589


Overview

Basic Information
Taxon OID3300025621 Open in IMG/M
Scaffold IDGa0209504_1001589 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100511 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16874
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (60.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015990Metagenome250N
F022856Metagenome212Y
F025510Metagenome / Metatranscriptome201N
F083372Metagenome113N
F087206Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0209504_100158915F025510AGGAMKYIKKFWVWLKETIHKFLNWFDSLMTPAPVVKKRGRPRKK
Ga0209504_100158922F083372GAGGMIMQQYKISYPRAEFCYARHIRDNLKHEGEIIYPHEPSSRLLEDGTWLLITITGERLGTVSPSGTVRLT
Ga0209504_100158923F087206AGGAMSNQYNEQELENIQSYVLEQDRKGLLENDIRDICFMYGLHPDDDRDEILEYIAESIFYEQTIGDLV
Ga0209504_100158924F015990AGGAGMGKGSGRRKEDINKIRNNWDSIFKKRDKKQITKVIIEFEMPGYPSIDEINNHVQELLINNKLESKTTTRNV
Ga0209504_100158927F022856N/AMTNFKLIVGNFRDILGKLRDILYTQMPKTRVGDAHISMYIHIHRRANPWRGFDSPESAHACAGER
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