NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209504_1040441

Scaffold Ga0209504_1040441


Overview

Basic Information
Taxon OID3300025621 Open in IMG/M
Scaffold IDGa0209504_1040441 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100511 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1511
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015812Metagenome / Metatranscriptome252Y
F046985Metagenome150N
F106085Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209504_10404411F046985N/ARKMMIVDTKEELNEWWLEEFGVDVDASKYVEVRVPAKTYAMLVHIGVFNIHGKGISDWASKVGVEAINIRTDFSVNMLLRDFQAVKMAVMLREYPFDRGYIQQADKIWRNILQHFRAFNPEYAEELKSKLFKRRVA
Ga0209504_10404412F015812AGGAGMNRTLYKRLEDICAREYVVNKLSEHKFRTFVDFLYDDIRTWDRPTDVSDVDVIHRVEEHLSHMVSLSLADAHIGTTHD
Ga0209504_10404413F106085AGGMTNNPLESLRKKLSFLLDNLKNKFRMLIKSKQNNKIIIKKDIKNNIPKHLKGLNNKQLKDLQSLFKMRI
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