NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209041_1003463

Scaffold Ga0209041_1003463


Overview

Basic Information
Taxon OID3300025623 Open in IMG/M
Scaffold IDGa0209041_1003463 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_100m_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8029
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001235Metagenome / Metatranscriptome741Y
F051547Metagenome144N
F086307Metagenome / Metatranscriptome111Y
F096226Metagenome / Metatranscriptome105N
F102085Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209041_100346315F086307GAGGMTNASAIQDLLRLLHEEWLDEGRKTVVKGMLEDIIDRMEDSVNLDDMR
Ga0209041_100346316F096226GGAMSLSRKDLESIICIACGKRYGEHTKGNGTKFNLPSLMTCMFRIQGTVVADGINDAPASSLKNEPSPPVDELDYDC
Ga0209041_10034633F051547AGGAGMIDPLLIATISVIGGAILNTVRGFLGSDETTYDIKKFFGALIIAVFAGIAVAQTLSLASLGITETILIGLSVGFSVDYAVSKAKKTV
Ga0209041_10034636F102085N/AMATSIYIFDSDKMFNAIYREHVDDLEHKMPLIDLYVKGQKLWVVTNSNDMKEQPRLDRSIVHFRKDNAKEWIEGDEKLVLHGKIRYNHKRNQLEFFPRLLRKPLLSMRVGRFFGNKKGKCYINYDKRYYDFKNDRMLFILENENEI
Ga0209041_10034638F001235AGGALPTELNTNENANDMTKKLWERHQSDEFTKVNNYKEGVCLGCMKVDVAAATIADICGDCAGKKGREPLLAKVCDKYYGLCFFCSKYKFNIEQVNGRFCNTCHSRIAKITKEYNEKGGFMKTDPFWISMRKKHGKDWKQIMGGYKKSNRR

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