Basic Information | |
---|---|
Taxon OID | 3300025623 Open in IMG/M |
Scaffold ID | Ga0209041_1003463 Open in IMG/M |
Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_100m_DNA (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 8029 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (50.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Saanich Inlet, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001235 | Metagenome / Metatranscriptome | 741 | Y |
F051547 | Metagenome | 144 | N |
F086307 | Metagenome / Metatranscriptome | 111 | Y |
F096226 | Metagenome / Metatranscriptome | 105 | N |
F102085 | Metagenome | 102 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209041_100346315 | F086307 | GAGG | MTNASAIQDLLRLLHEEWLDEGRKTVVKGMLEDIIDRMEDSVNLDDMR |
Ga0209041_100346316 | F096226 | GGA | MSLSRKDLESIICIACGKRYGEHTKGNGTKFNLPSLMTCMFRIQGTVVADGINDAPASSLKNEPSPPVDELDYDC |
Ga0209041_10034633 | F051547 | AGGAG | MIDPLLIATISVIGGAILNTVRGFLGSDETTYDIKKFFGALIIAVFAGIAVAQTLSLASLGITETILIGLSVGFSVDYAVSKAKKTV |
Ga0209041_10034636 | F102085 | N/A | MATSIYIFDSDKMFNAIYREHVDDLEHKMPLIDLYVKGQKLWVVTNSNDMKEQPRLDRSIVHFRKDNAKEWIEGDEKLVLHGKIRYNHKRNQLEFFPRLLRKPLLSMRVGRFFGNKKGKCYINYDKRYYDFKNDRMLFILENENEI |
Ga0209041_10034638 | F001235 | AGGA | LPTELNTNENANDMTKKLWERHQSDEFTKVNNYKEGVCLGCMKVDVAAATIADICGDCAGKKGREPLLAKVCDKYYGLCFFCSKYKFNIEQVNGRFCNTCHSRIAKITKEYNEKGGFMKTDPFWISMRKKHGKDWKQIMGGYKKSNRR |
⦗Top⦘ |