NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209041_1024452

Scaffold Ga0209041_1024452


Overview

Basic Information
Taxon OID3300025623 Open in IMG/M
Scaffold IDGa0209041_1024452 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_100m_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2150
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019751Metagenome / Metatranscriptome228N
F065664Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0209041_10244522F065664N/AMAGVAEIMCKYGAGDKVLQLEQFDTMGFHEYYGVTELFKDLQSLIKRAEYIQTNYDKIVIHDYSEFKLNFPKSKVVLVFHGSKLRGLNEKELETVKEYPCYVTTSDLFDILPFAKHLPAPVDSDLFKKDVEGYGWIAINRPYQRDLIEKRIKDRYPDVQYYERNASSIIRYEDMPDFLSQYKHYVDWKFTTDTIPLSLPDPSCTGIQALALGLTVHDKDGGTLSTNLLLIHDAKRITERFINEIT
Ga0209041_10244523F019751GGAGMTRTRGPDLSKEFHEYISTQWMFFGRNAYQIAEQINKDTVLMSKYGKTTPAGVHYHVKQIQQEMENTISEDAMDTYIGEFIRARLGFEQDVIALEEIMADEKAKGFDDMDKELYLKFARTRHEIKLDSFKMLQDSALPLQVKKLKMERAKLRPARPMPEVEDHGVSK
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